CDS

Accession Number TCMCG027C25206
gbkey CDS
Protein Id XP_018820500.2
Location join(20498863..20498949,20500799..20500919,20501022..20501146,20502318..20502371,20502456..20502680,20503359..20503514,20503633..20503728,20503829..20505766,20506742..20506911,20507022..20507088,20507178..20507290,20507646..20507791,20508088..20508347,20508453..20508626,20508750..20508887,20509406..20509671,20511229..20511349,20512508..20512678)
Gene LOC108990858
GeneID 108990858
Organism Juglans regia

Protein

Length 1475aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA350852
db_source XM_018964955.2
Definition DNA-directed RNA polymerase IV subunit 1 isoform X1 [Juglans regia]

EGGNOG-MAPPER Annotation

COG_category K
Description DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE br01611        [VIEW IN KEGG]
ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K16250        [VIEW IN KEGG]
EC 2.7.7.6        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000418        [VIEW IN EMBL-EBI]
GO:0000428        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005666        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010495        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055029        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGACCATGAGTTTTCTGAAGAGCAACAGGTGCCATCTGGTCACATAACTGCCATAAGATTTAGTTTTTCAACTCAGACAGATACAGAGAAGGCATCTGTTATATCAATTGACGCAGTTAGTGAGGTCACTGATCCTAAGTTGGGACTTCCAAATCCATCTTCTCAATGCTCCACATGTGGTGCCAGAGATTTAAAATACTGTGAAGGTCATTTTGGGGTTATCAAGTTTCCTTTCACCATACTCCATCCTTATTTTTTATCGGAAGTTGCAAAGATTTTGAACAAAATTTGCCCGGGATGTAAATCTGTACGGCAAGAACTAAAGGTCAAGGATGGGGATTCGGTTCGTAGCCATCGTCAGTCTAAGAGTTGCAAATATTGTGCTGGAAATTCAGTAGAGTGGTATCCAACGGTGAAATTTAAGGTTTCCTCTACTGAAGTGTTCAGAAATTGTGCGATTATAGTAGAGATAAATGAAAAGTTGAAAAATAACGTTCAGAAGAAAAGTTTCAGGGGTTTGTCTGCTGACTTTTGGGATTTTATTCCAAAAGATGAACAGCAAGAAGAAAATTGTTTGAAACCAAACAGAAGGGTTCTATCACATGCACAGGTCCGTTATTTATTGAATGATGTTGATCCCAAGCTCATAAAAAAGTTTGTTTTGAGGATAGAATCTCTTTTTCTCAACTGCTTTCCTGTGACGCCAAACTGTCATCGTGTTACTGAAGTTACACATGCATTTTCTAACGGACAGCGACTGGTCTTTGATGACCGAACCAGGGCCTACAAGAAACTGGTTGACTTTAGAGGGATAGCTAATGAGTTGGGTTCTCGAGTTCTGGACTGCCTAAAAATTTCAAAGTTAAGCTCGGAGAAGTTACCAGATAAATTTTTGGTTTCTGTCCAGCAAAAAAAAGGTGCAGATCCTTCCATCTCCTCTGGGTTGAGATGGATAAAAGATGTTGTTCTTGGGAAGCGAAATGATCACTGTTTCCGAATGGTGGTGGTTGGTGATCCACACATTAAGCTCAGTGAAATTGGTATACCCTGTCATATTGCGGAGAGATTGCAAATTTCTGAGAGTTTGAACAGGTGGAACTTTGATAAATTGAGCGATTGCTGTAGACTGTGTTTCATTGAAAAGGGAGAGGTTTATGTGCGTAGAAAAGGTAGTCTAGTTCGTGTGCGTCGCATTGCCGAACTTCAAATTGGGGACACTATATACAGGCCTCTTAATGATGGGGATATTTTGTTAATAAACAGGCCTCCATCGATACATCAACACTCCCTTATTGCTTTATCTGTTAAAGTCCTACCTGTAGCTTCAGTTCTTTCAATCAACCCACTTTGCTGTTCTCCCTTTCGTGGGGATTTCGATGGCGATTGCCTTCATGGCTATATTCCTCAATCTATTGATGCCAGGGTTGAACTTAGTGAGCTTGTTGCGTTAGATAGGCAATTAATTAATGGGCAGAATGGTAGGAACCTTCTTTCGCTTAGTCAAGATAGTTTGACTGCTGCCCATTTGGTCATGGAGGATGGGATCCTCTTGAACCTCTTCCAAATGCAGCAGCTGCAAATGTTCTGTCCGCATCAACTTCCACCGCCAGCTATTGTCAAAGCTCCCTCACTAAGTAGTTTTATTTGGACTGGCAAGCAATTATTCAGCATGCTACTGCCTCCAGGTTTTGAATATGATTTTCCTTCAAATGGTGTTTATGTTAGTAATGGAGAGCTTTTATCTTCTGAAGGATCTTTTTGGCTGCGTGACAACAATAGCAACCTTTTTCAAAGTCTTATCAAACATTGTCAGGGTAAGGTACTTGACTTCTTGTATGCTGCTCAGGAAGTACTTTGTGAGTGGTTATCAATGCGTGGTTTGAGTATTTCACTTTCAGACTTATACCTCTCCTCTAACTCATCCTCCCGGAAAAACATGATGGATGAGATCTTTTGTGGTTTACAAGAAGCAGAGCAGACATGTAATTTCAAACAGTTGATGGTGGATTCTTGTCGGTATTTTCTTGTCGAAGGTGGTGAAGAGAATGCTGTGGTTCTTGACGTGGAACGTTTGTGTTATGAGAAGCAAAAATCGTCTGCACTCAGTCAAGCTTCTGTTGATGCTTTCAAGCAAGTCTTTCGGGATATACAAAACTTAGTCTACAAATATGCAAGCAAGGACAACTCATTTATGTCTATGTTCAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTGGTTCAGCATAGCATGTGTCTTGGCTTGCAACATTCTCTGGTTCCTCTATCATTTAGAATCCCCCACCAGCTCTCATGTGCTGCTTGGAATAACCAAAAGGTATATGGTTCAGTCCAGGATGCTGATGATAATCCTGAACATGTTCGGACTTACATCCCGTATGCTGTAGTTGAAAATTCCTTTCTGACGGGCTTGAATCCTTTAGAATGTTTTGTTCATTCAGTCACTAGTCGAGATAGTTCTTTCAGTGACAATGCAGACCTCCCTGGGACTTTGAACCGTAGGCTTATGTTCTTAATGCGTGATGTGTACACAGCATACGATGGAACGGTGCGAAATGCATATGGGAATCAGCTTATTCAGTTCTATTATAATCATAATAAGGATGCATCTACTCCAACTAGCAGCATCGATGACTTATTTGGTGAGAGTGTCGATGCTCATTATGGGATAGGTGGCCAGCCTGTCGGTTCATTGTCTGCTTCTGCCATTTCAGAAGCTGCATACAGTGCTTTGGACCAACCGATTAGTGTACTTGAAACTTCTCCATTGCTGAATCTGAAGAAAGTACTGGAGTCTGGGACCAGAAAACGTAGTGCTAACAAAACTATGTCAATATATTTGTCTGAAAAACTTGGGAGACAGCGGCATGGTTTTGAGTATGGAGCCTTAGAAATCAAGAATCATTTGGAGAGACTAATATTTTCAGAAATTGTATCTACTGTCATGATAATCTTTTCCCCACAGACTTGTAGCAAGATGTCTTTCAGTCCTTGGGTTTGCCATTTTCATATATGCAAGGAAATTGCAAGGATGCGAGGATTAAAAGTGCATTCAATCATCAATTCTCTTCAGAAGAGGTATGACTACTTCAGGACAAAATTCAAGCTTCCCAACTTGCAAATAAGAAGCAAAGACTGTTCTGTAAATGAAGCACGGGAAGATGATGATATATTTTGCATCAATGTCATGATAGCTGAAGTTTCCAGGAATTCTTCTTTACCATTGGATACAGTTCGAGACTTGGTCATACCTTTCCTTCTCGGAACAGTTATTAAAGGTTACCCAGAGATCAAGAAGGTAAATTTTTTATGGAATGATTGGTCCAAAGTACCAAGATGTCAGCACGGTTCTTCTGGTGAACTATACTTGAGGGTTGCTATGTCAGGAGACTCTCAGATGACAGATCTCTGGAGTTTACTAAAGAATGACTGTCTACAAATAATGGATATGATAAACTGGTCACGTAGTCATCCAGATAGCGTTCATGATTTTTGTTTGGCCTATGGAATAGATGCTGGATGGAAATATTTTCTTAATAGGTTGGACTCTGCAATATCCGACACTGGCAAGTCTGTTCTTCCTCAGCATTTGCTTCTTGTTGCTGATAGCCTATCAGCCACTGGAGAGTTTGTTGGCTTGAATGCAAAAGGCATTGCACAGCAAAGAGAACACGCATTAGTCTCGTCACCCTTTATGCAGTCTTGCTTCTCTAACCCTAGTGCATGCTTTATTAAAGCTGCTAAGGCTGGCATTATGGATGATCTTAAGGGTCATATTGATGCATTGGCGTGGGGAAAGGTTCCTTCTACAGGGACTGGCAGCCACTTTGATATTATGTATTCTGGGAAGGGGTATGAGCTTGCACAGCCTGAGGATGTTTATAACCTGCTGGGTAGCCAAATTATTTCTGATGAGCAGAATGTAAAGACCAAAACGCCTGTTGTACACCACAGTACATCTGCCAAATGTGGCACTCAGTTTGTCTACAAGTATGGCGGTCTTGCACCAAAAGAACTTAAAAAGATGGAAAGCATATCGAAATCACTCTTAAGAAGCGTTTTGACATCAAATGATGTTCATAAGCTATCCCATGTGTTGAAGGGTATATTGCACAAGTATCCTATTAATCACAGGTTAGATGAAAAGGACAAGTCAACTTTGATGATGGCTCTATATTTTCATCCTCGAAGGGATGAAAAGATTGGAAGTGGAGCTCAGGACATAAAGGACATAAAGGTTAGTTCCCACCCCAAGTACCAGAATACACGTTGCTTTGAATTGGTACGAATGGACGGGACAGTTGAAGATTTTTCTTACCACAAGTGTGTTCTTGGTGCTCTTGAGATGATTGATCCTCGAAGGGCAAAAAGCTACAAATCAAAATGGTTACAACACAATAATGTCTAA
Protein:  
MDHEFSEEQQVPSGHITAIRFSFSTQTDTEKASVISIDAVSEVTDPKLGLPNPSSQCSTCGARDLKYCEGHFGVIKFPFTILHPYFLSEVAKILNKICPGCKSVRQELKVKDGDSVRSHRQSKSCKYCAGNSVEWYPTVKFKVSSTEVFRNCAIIVEINEKLKNNVQKKSFRGLSADFWDFIPKDEQQEENCLKPNRRVLSHAQVRYLLNDVDPKLIKKFVLRIESLFLNCFPVTPNCHRVTEVTHAFSNGQRLVFDDRTRAYKKLVDFRGIANELGSRVLDCLKISKLSSEKLPDKFLVSVQQKKGADPSISSGLRWIKDVVLGKRNDHCFRMVVVGDPHIKLSEIGIPCHIAERLQISESLNRWNFDKLSDCCRLCFIEKGEVYVRRKGSLVRVRRIAELQIGDTIYRPLNDGDILLINRPPSIHQHSLIALSVKVLPVASVLSINPLCCSPFRGDFDGDCLHGYIPQSIDARVELSELVALDRQLINGQNGRNLLSLSQDSLTAAHLVMEDGILLNLFQMQQLQMFCPHQLPPPAIVKAPSLSSFIWTGKQLFSMLLPPGFEYDFPSNGVYVSNGELLSSEGSFWLRDNNSNLFQSLIKHCQGKVLDFLYAAQEVLCEWLSMRGLSISLSDLYLSSNSSSRKNMMDEIFCGLQEAEQTCNFKQLMVDSCRYFLVEGGEENAVVLDVERLCYEKQKSSALSQASVDAFKQVFRDIQNLVYKYASKDNSFMSMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRIPHQLSCAAWNNQKVYGSVQDADDNPEHVRTYIPYAVVENSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLNRRLMFLMRDVYTAYDGTVRNAYGNQLIQFYYNHNKDASTPTSSIDDLFGESVDAHYGIGGQPVGSLSASAISEAAYSALDQPISVLETSPLLNLKKVLESGTRKRSANKTMSIYLSEKLGRQRHGFEYGALEIKNHLERLIFSEIVSTVMIIFSPQTCSKMSFSPWVCHFHICKEIARMRGLKVHSIINSLQKRYDYFRTKFKLPNLQIRSKDCSVNEAREDDDIFCINVMIAEVSRNSSLPLDTVRDLVIPFLLGTVIKGYPEIKKVNFLWNDWSKVPRCQHGSSGELYLRVAMSGDSQMTDLWSLLKNDCLQIMDMINWSRSHPDSVHDFCLAYGIDAGWKYFLNRLDSAISDTGKSVLPQHLLLVADSLSATGEFVGLNAKGIAQQREHALVSSPFMQSCFSNPSACFIKAAKAGIMDDLKGHIDALAWGKVPSTGTGSHFDIMYSGKGYELAQPEDVYNLLGSQIISDEQNVKTKTPVVHHSTSAKCGTQFVYKYGGLAPKELKKMESISKSLLRSVLTSNDVHKLSHVLKGILHKYPINHRLDEKDKSTLMMALYFHPRRDEKIGSGAQDIKDIKVSSHPKYQNTRCFELVRMDGTVEDFSYHKCVLGALEMIDPRRAKSYKSKWLQHNNV